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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Victor Lozano | 12th | Bill Vargas | 2nd | 6th |
| First Basemen | Josh Gingerich | 13th | Carlos Marin | Tied for 3rd | 10th |
| Second Basemen | Andres Jaquez | 8th | Chad Atkinson | 8th | 5th |
| Third Basemen | Patrick Keating | 15th | Ed Moya | 3rd | 9th |
| Shortstops | Kinya Shiraishi | 14th | Bobby Stovall | 2nd | 8th |
| Left Fielders | Travis Kinnard | 11th | Alex Mendez | Tied for 10th | 9th |
| Center Fielders | Danny Villarreal | 11th | Tony Vasques | Tied for 12th | 14th |
| Right Fielders | Justin Trovato | Tied for 7th | Bill Worsham | 9th | 8th |
| Starting Pitchers | Art Madsen | 5th | Ben Peterson | 4th | 5th |
| Relievers | Ryan Mefford | 15th | Rod Paxton | 7th | 15th |
| Closers | John Griese | 15th | Daniel Vargas | 3rd | 11th |
